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A Deep Neural Network Model for Packing Density Predictions and its Application in the Study of 1.5 Million Organic Molecules

preprint
revised on 08.07.2019 and posted on 08.07.2019 by Mohammad Atif Faiz Afzal, Aditya Sonpal, Mojtaba Haghighatlari, Andrew J. Schultz, Johannes Hachmann
The process of developing new compounds and materials is increasingly driven by computational modeling and simulation, which allow us to characterize candidates before pursuing them in the laboratory. One of the non-trivial properties of interest for organic materials is their packing in the bulk, which is highly dependent on their molecular structure. By controlling the latter, we can realize materials with a desired density (as well as other target properties). Molecular dynamics simulations are a popular and reasonably accurate way to compute the bulk density of molecules, however, since these calculations are computationally intensive, they are not a practically viable option for high-throughput screening studies that assess material candidates on a massive scale. In this work, we employ machine learning to develop a data-derived prediction model that is an alternative to physics-based simulations, and we utilize it for the hyperscreening of 1.5 million small organic molecules as well as to gain insights into the relationship between structural makeup and packing density.We also use this study to analyze the learning curve of the employed neural network approach and gain empirical data on the dependence of model performance and training data size, which will inform future investigations.

History

Email Address of Submitting Author

m27@buffalo.edu

Institution

State University of New York at Buffalo

Country

US

ORCID For Submitting Author

0000-0001-8261-2024

Declaration of Conflict of Interest

No conflict of interest

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Exports