Matrix-Formation Dynamics Dictate Methyl Nitrite Conformer Abundance

22 November 2023, Version 1
This content is a preprint and has not undergone peer review at the time of posting.

Abstract

Methyl nitrite has two stable conformational isomers resulting from rotation about the primary C-O-N-O dihedral angle: cis-CH3ONO and trans-CH3ONO, with cis being more stable by ~5 kJ/mol. The barrier to rotational interconversion (~45 kJ/mol) is too large for isomerization to occur under ambient conditions. This paper presents evidence of a change in conformer abundance when dilute CH3ONO is deposited onto a cold substrate; the relative population of the freshly deposited cis conformer is seen to increase compared to its gas-phase abundance, measured by in-situ infrared spectroscopy. We observe abundance changes depending on the identity of the bath gas (N2, Ar, and Xe) and deposition angle. The observations indicate that the surface properties of the growing matrix influence conformer abundance—contrary to the widely held assumption that conformer abundance in matrices reflects gas-phase abundance. We posit that differences in the angle-dependent host-gas deposition dynamics affect surface morphology, causing changes in conformer abundances. Quantum chemistry calculations of the binding energies between CH3ONO and a single bath-gas component reveal that the N2:cis¬-CH3ONO complex is stabilized relative to the N2:trans-CH3ONO complex. However, significant energetic stabilization is not observed in 1:1 complexes of Ar:CH3ONO or Xe:CH3ONO. From our results, we conclude that the surface morphologies play a significant role in trapping cis-CH3ONO more effectively than trans-CH3ONO, likely because cis-CH3ONO is more compact. Taken together, the observations highlight the necessity for careful characterization of conformers in matrix-isolated systems, emphasizing a need for further study into the deposition dynamics and surface structure of chemically inert matrices.

Keywords

matrix-isolation spectroscopy
conformational isomers

Supplementary materials

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Description
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Title
Manuscript Supplementary Materials
Description
The supporting information contains detailed explanation of conformer abundance determination using integrated absorbance, gas-phase spectra of Ar:CH¬3ONO and N2:CH3ONO, full spectral range matrix-isolated infrared spectra of X:CH3ONO (X = N2, Ar, Xe), effusive source characterization, matrix-isolated spectra of varying deposition angles for Ar:CH3ONO and N2:CH3ONO.
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Cartesian coordinates of complexes
Description
Computed cartesian coordinates for simulated complexes
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